Home
Music_Metasearch
Music Top Sites
Music Store
AllMusicListings
Concert Listings
Concert Tickets
AllMusicTalk
Chat Rooms
Message Boards
MusicNews
Pop Music News
Pop Music Reviews
Music Business
MP3 News
Community
Blogs
Free Member Blogs
AllMusicPages
Free Web Pages
AllMusicBookmarks
Your Bookmarks
AllMusicFun
Musical Postcards
Relationship Test
Tarot Readings
Numerology
Music Auctions
Auctions
Classifieds
Music Apparel
AllMusicSearch Apparel
Music Store
MP3 Players
Audio Equipment
MP3 Software
Musical Instruments
Music Books
Music Magazines
Music T-Shirts
Alternative Rock
Blues
Broadway & Vocal
Children's
Christian & Gospel
Classic Rock
Classical
Country
Dance & DJ
Folk
Hard Rock & Metal
International
Jazz
Latin Music
Miscellaneous
New Age
Opera & Vocal
Pop
R&B
Rap & Hip-Hop
Rock
Soundtracks
Music Videos
Music DVDs
Software (37)
|
- Top/Science/Biology/Evolution/Software
- Top/Science/Biology/Software
- Top/Science/Earth Sciences/Paleontology/Products and Services/Software
- Top/Science/Math/Statistics/Software
PAUP is the most widely used package for phylogenetic inference, and now implements maximum likelihood and distance methods as well as various forms of parsimony. Powerful and very easy to use, particularly the Mac version.
http://paup.csit.fsu.edu/
Joe Felsenstein's suite of programs implementing perhaps the widest range of phylogenetic inference package. The most widely distributed phylogeny software. Includes distance, likelihood and parsimony methods for a wide range of different types of data, a
http://evolution.genetics.washington.edu/phylip.html
Program to create internet-accessible interactive taxonomic keys.
http://ctap.inhs.uiuc.edu/dmitriev/
Clann implements a large number of supertree methods for reconstructing phylogenies from sets of input phylogenetic trees.
http://bioinf.may.ie/software/clann/
For analysis of phylogenies. Includes a wide range of randomization methods, consensus methods, tree comparison measures, and calculates reconciled trees. Now aging, and available only for Windows machines, but still has some unique features. Much of the
http://taxonomy.zoology.gla.ac.uk/rod/cpw.html
Uses reconciled trees to compare gene trees and species trees, explaining incongruence between the phylogenies by postulating horizontal transfer, gene duplication and loss events. Reprints of papers describing the methods are available from the GeneTree
http://taxonomy.zoology.gla.ac.uk/rod/genetree/genetree.html
A powerful Macintosh package for phylogenetic analysis. Not intended as a stand-alone tool to infer phylogeny, but excels in studying character evolution. Also provides tools for entering and editing data and phylogenies and producing attractive tree diag
http://phylogeny.arizona.edu/macclade/macclade.html
Experimental, modular software for evolutionary biology, designed to help biologists analyze comparative data about organisms.
http://mesquiteproject.org/mesquite/mesquite.html
Open source software for estimation of phylogenies using Bayesian inference.
http://mrbayes.csit.fsu.edu/
Freeware software for phylogenetic analyses using parsimony.
http://www.cladistics.com/aboutNona.htm
A brief overview of using NONA for phylogenetic analysis.
http://www.gwu.edu/~clade/faculty/lipscomb/Nonadoc.html
Phylogenetic analyses of DNA or protein sequences using maximum likelihood.
http://abacus.gene.ucl.ac.uk/software/paml.html
Graphical color interface for molecular phylogenetic inference. It performs neighbor-joining, parsimony, and maximum likelihood methods and bootstrap with any of them.
http://pbil.univ-lyon1.fr/software/phylowin.html
Java application for drawing phylogenetic trees. Allows you to save in various formats, print, edit, modify, and adorn the tree, and should work on any java runtime platform.
http://iubio.bio.indiana.edu/soft/molbio/java/apps/trees/
Computer program to reconstruct phylogenetic trees from molecular sequence data by maximum likelihood.
http://www.tree-puzzle.de/
Experimental program for comparing host and parasite trees.
http://taxonomy.zoology.gla.ac.uk/rod/treemap.html
Simple program for displaying phylogenies.
http://taxonomy.zoology.gla.ac.uk/rod/treeview.html
Open source software for estimating absolute rates of molecular evolution and divergence times on phylogenetic trees.
http://loco.biosci.arizona.edu/r8s/
Last Updated: 2007-01-02 17:59:41
|
The content of this directory is based on the Open Directory and has been modified by AllMusicSearch.com editors
