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Molecular Biology Tools (21)
- ethods and Techniques:TTop/Science/Biology/Biochemistry and Molecular Biology/Methods and Techniques
- roducts and Services:TTop/Science/Biology/Biochemistry and Molecular Biology/Products and Services
- ucleic Acids:TTop/Science/Biology/Biochemistry and Molecular Biology/Biomolecules/Nucleic Acids
Translates a plane format of the DNA sequence (first ORF only) to amino acid sequence. Provides numbering of every 10th AA and every 30th bp and align them by codon.
http://www.dnatoprotein.com
Displays the codon quality in two different ways, codon usage frequency or relative adaptiveness values. FAQ included.
http://gcua.schoedl.de
Generates primers for Ligation Independent Cloning (LIC).
http://noxtoolbox.ibs.fr/LICgenerator/
Provides a DNA sequence analysis to find restriction enzymes sites. Finds also non-overlapping open reading frames using the E.coli genetic code.
http://tools.neb.com/NEBcutter2/
Identifies all ORFs using the standard or alternative genetic codes. Provides an interactive, graphical interface and allow for saving of a deduced amino acid sequence in various formats. Allows searching against the sequence database using the BLAST serv
http://www.ncbi.nlm.nih.gov/gorf/gorf.html
Provides reverse complement sequence for DNA or RNA primer strands, self complementarity check, physical and thermodynamic constants, melting temperature (Tm). Includes calculation formulas.
http://www.basic.northwestern.edu/biotools/OligoCalc.html
Offers server generated plasmid maps and image files, from input DNA sequences up to 20,000 bp. Includes citation, and dowloadable source code. Maintained by the University of Alberta, USA.
http://wishart.biology.ualberta.ca/PlasMapper/
Provides primers specific to the PCR template sequence. Includes primer pair specificity checking against a selected database.
http://www.ncbi.nlm.nih.gov/tools/primer-blast/
Analyses up to three trace files collected on the ABI 3730 and 3730xl DNA sequencers.
http://www.nucleics.com/qualtrace-dna-sequencing-demo/
The restriction enzyme database. Maintained by the New England Biolabs, USA.
http://rebase.neb.com/rebase/rebase.html
Provides restriction enzyme digest analysis of the input DNA sequence. Results are presented graphically as a "virtual gel".
http://tools.neb.com/REBsites/
Determines the number and highlights a rare E. coli codons in a provided DNA sequence. Maintained by UCLA, USA.
http://nihserver.mbi.ucla.edu/RACC/
Provides graphical and numerical representation of the codon adaptation index, frequency distribution and GC content of the DNA sequence. Maintained by the GenScript, USA.
http://www.genscript.com/cgi-bin/tools/rare_codon_analysis
Converts amino acid and nucleotide sequence data formats including FASTA, GenBank, Phylip and others. Maintained by NIH, USA.
http://www-bimas.cit.nih.gov/molbio/readseq/
Finds restriction enzyme cleavage sites in linear and circular DNA sequences. Provides also a virtual digest function.
http://www.restrictionmapper.org
Silent mutation restriction enzyme scan. Finds new restriction sites to insert (mutate) with no translation change.
http://mobyle.pasteur.fr/cgi-bin/portal.py?form=silent
A Java application that facilitates the identification of potential ORFs, based on provided DNA sequence and probable ORF length.
http://web.mit.edu/star/orf/
DNA restriction enzyme analysis. Provides a number of hits per enzyme and a list of non-cutters. Allows for selection of the enzymes and parameters.
http://mobyle.pasteur.fr/cgi-bin/portal.py?form=tacg
Provides restriction analysis, silent mutation scanning and SNP-RFLP analysis. Allows for utilization of all commercially available type II restriction enzymes.
http://watcut.uwaterloo.ca/watcut/watcut/template.php
Allows for automatic primer design for the sequencing or PCR from the DNA template sequence or locus name. Provides a list of pairs of primers with corresponding melting temperature (Tm) and GC content.
http://seq.yeastgenome.org/cgi-bin/SGD/web-primer
Provides a map of restriction enzyme sites and a list of non-cutting enzymes for a corresponding DNA sequence.
http://users.unimi.it/~camelot/tools/cut2.html
Last Updated: 2007-01-02 17:59:20
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The content of this directory is based on the Open Directory and has been modified by AllMusicSearch.com editors
